Philly2013

Philly 2013 OBI workshop

 * Dates: May 29th - 31th, 2013


 * Location: Blockley Hall, Rm 1438 (14th floor conference room), University of Pennsylvania, Philadelphia, PA 19104 (423 Guardian Drive)

Attendees

 * Chris Stoeckert
 * Jie Zheng
 * Bjoern Peters
 * James Overton
 * Oliver He
 * Alan Ruttenberg

Remotely
 * Melissa Haendel
 * Carlo Torniai
 * Matthew Brush
 * Philippe Rocca-Serra
 * Alejandra Gonzalez-Beltran
 * Jennifer Fostel
 * Ramona Walls
 * Christian Bölling

Agenda
Goal: Complete OBI core - finish reviewing definitions in OWL, include all metadata - include 2-3 use cases that cover each of the terms - incorporate completed terms into the manuscript Realize that this will not be perfect. --> Writeup the expectations others can have on the core, and communicate that this will be more but not completely stable. -->Document process of further changes.

Pre-workshop: Jie and James - will go through all the terms and document status and what needs to be resolved. - Assign people to specific terms - Update / create use cases

Please add your comments on the core terms which were grouped in 4 different categories. - OBI core: Data Bjoern - OBI core: Inferences James - OBI Core: Specimens Chris - OBI core: Plans Jie - Suggested review criteria May 29 - 9:00AM - 9:30AM: Core review introduction- where do we stand? What do we need to resolve? - 9:30AM - 12:30PM: Data (Bjoern) - 2:00PM - 5:00PM: Inferences (James)

May 30 - 9:00AM - 9:30AM: recap of previous day - 9:30AM - 12:30PM: Specimens (Chris) - 2:00PM - 5:00PM: Plans (Jie)

May 31 (half day) - 9:00AM - 10:30AM: recap/ follow ups -- data item -> value specification; impact on data transformation - 10:30AM- 12:00PM: reasoning performance (e.g., affect of inverses), release and manuscript plans

Attend remotely using WebEX
--- To join the online meeting (Now from mobile devices!) ---
 * 1) Go to https://iedb.webex.com/iedb/j.php?ED=233863582&UID=0&PW=NMGE0MmFlZDk2&RT=MiM0
 * 2) If requested, enter your name and email address.
 * 3) If a password is required, enter the meeting password: epitope
 * 4) Click "Join".

To view in other time zones or languages, please click the link: https://iedb.webex.com/iedb/j.php?ED=233863582&UID=0&PW=NMGE0MmFlZDk2&ORT=MiM0

--- To join the audio conference only --- Call-in toll number (US/Canada): 1-650-479-3208

Access code:629 961 391

--- For assistance ---
 * 1) Go to https://iedb.webex.com/iedb/mc
 * 2) On the left navigation bar, click "Support".

You can contact me at: iedb_conference@liai.org

Airport Transportation
From Philadelphia Airport to University City / Center City

Lady Liberty Shuttle Van


 * phone: 1-215-724-8888
 * website: http://www.ladylibertyshuttle.com/
 * Lady Liberty Transportation provides door-to-door shuttle service from Philadelphia airport to all Center City and University City hotels and residences.
 * Fee: $10 per adult
 * Hours: Sunday - Saturday 7 AM - 11 PM
 * Travel Time: approximately 30-45 minutes
 * In baggage claim at each terminal, there is a ground transportation desk. The attendant will assist you in connecting with Lady Liberty to secure service. The approximate wait time is 15 minutes for a van. You must have your luggage prior to securing service.

Regional Rail (Airport Line)

Airport Line Schedule: http://www.septa.org/schedules/rail/pdf/air.pdf


 * Station close to UPenn Campus: 'university city' or '30th street station'
 * Station at Center City: Market East Station
 * Fare: $7 one-way, $12.5 round trip

Places to stay

 * In walking distance:
 * University City Sheraton
 * Inn at Penn


 * In downtown:
 * Marriott Courtyard Downtown
 * Address: 21 N Juniper Street, Philadelphia, Pennsylvania 19107
 * Sonesta
 * Address: 1800 Market Street, Philadelphia, Pennsylvania, USA 19103
 * Club Quarters
 * Address: 1628 Chestnut Street (At 17th Street), Philadelphia, PA 19103

Places to eat

 * Philly Downtown:
 * E Mei Restaurant
 * In walking distance:
 * White Dog Cafe
 * Baby Blues BBQ
 * Distrito
 * Harvest