Implementation

Implementation details of projects using OBI

1. ISAcreator and ISAconfigurator - guiding users to use OBI (and other ontologies) in the annotation of multi-assays studies 2. BioInvestigation, a public ISA-based repository instance - using OBI in the annotation of multi-assays studies (Contact Person: Philippe Rocca-Serra and Susanna-Assunta Sansone)
 * ISA infrastructure - http://isatab.sourceforge.net

(Contact Person: Melissa Haendel, Carlo Torniai) - instruments - services (Contact Person: Fahim Imam) - Developed based on OBI (old version) - Data transformation (Contact Person: Jessica Turner) - data scale types - independent/dependent variables - analyses (Contact Person: Bjoern Peters) -assay
 * Eagle-i - http://www.eagle-i.org/home
 * Neuroscience Information Framework (NIF) - http://nif.nih.gov/
 * Biomedical Informatics Research Network (BIRN) - http://www.birncommunity.org/
 * The Immune Epitope Database (IEDB) - http://www.immuneepitope.org/

(Contact Person: Trish Whetzel) - instruments
 * Biomedical Resource Ontology (BRO) - http://bioportal.bioontology.org/ontologies/39002

(Contact Person: Oliver He, Zuoshuang "Allen" Xiang) - independent/dependent variables, statistical analysis (ANOVA)
 * Vaccine Investigation and OnLine Information Network (VIOLIN) - http://www.violinet.org/index.php

(Contact Person: Helen Parkinson, James Malone, Jie Zheng, Chris Stoekert) - mapping the MGED ontology to OBI - using OBI in the annotation of microarray experiments
 * ArrayExpress and other microarray experiments database - http://www.ebi.ac.uk/microarray-as/ae/

Comments and responses on NBT paper http://docs.google.com/Doc?docid=0AaEXoAK_iKrtZGhnbXQ1azZfMjE0ZnhjeDlyY2I&hl=en&pli=1