Workshop Bethesda 2007 July case review

July Bethesda OBI Workshop - Use Case Review
This page provides a general outline of the Use Cases we'd like to review at the meeting, a brief definition of Use Case in this context, and aggregates links to Use Cases from specific OBI Branch Use Case pages.

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General Use Case Hierarchy

 * Use of OBI within other ontologies
 * NMR Instruments (for metabolomics investigation)
 * BIRNLex - from BIRN
 * Representation of biomedical investigation instances - experiment provenance - referencing OBI elements
 * Representation of biomedical investigation instances using current formats (XML Schemas, flat file formats, etc.) designed by specific communities for export/exchange of provenance data
 * gene expression studies
 * FuGE
 * MicroArray and Gene Expression (MAGE)
 * v1.1
 * v2.0 (layered on top of FuGE)
 * bioimaging studies
 * XML-based Clinical Experiment Data Exchange Schema (XCEDE) (from BIRN)
 * Digital Imaging and Communications in Medicine (DICOM)
 * Representation of biomedical investigation instances using Minimal Information Lists
 * Minimal Information for Biological and Biomedical Investigations (MIBBI)

OBI Branch Use Case Summaries

 * link to Biomaterial Branch Use Cases
 * link to Data Transformation Branch Use Cases
 * link to Digital Entity and Non-realizable Entity Branch Use Cases
 * Function Branch Use Cases
 * link to Plan (Investigation Design & Protocol) Branch Use Cases
 * link to Protocol Application Branch Use Cases
 * link to Qualities Branch Use Cases
 * link to Role Branch Use Cases
 * link to Relation Branch Use Cases

OBI Community Use Case Summaries

 * link to Cellular Assays Community Use Cases
 * link to Crop Sciences Community Use Cases
 * link to Clinical Trials Community Use Cases
 * link to Environmental Biology Community Use Cases
 * link to Flow Cytometry Community Use Cases
 * link to Genomics/Metagenomics Community Use Cases
 * link to ImmPort Community Use Cases
 * link to Immune Epitope Database and Analysis Resource Community Use Cases
 * link to In Situ Hybridization and Immunohistochemistry Community Use Cases
 * link to Metabol/nomics Community Use Cases
 * link to Neuroinformatics and Bio-imaging Community Use Cases
 * link to Nutrigenomics Community Use Cases
 * link to Polymorphism Community Use Cases
 * link to Proteomics Community Use Cases
 * link to Toxicogenomics Community Use Cases
 * link to Transcriptomics Community Use Cases